There's criticism of our industrial food system because it allows salmonella in tomatoes. But the raw milk system allows salmonella in milk (see this MSNBC piece).
Personally, I think the food system is rather like the transportation system. Commercial airliners are the safest way to travel: very regulated, very industrial, very centralized, very much scrutinized. Your private car is one of the most unsafe ways to travel (bicycles are worse): not very regulated, very decentralized.
So too for the food system--the centralized, industrialized food system is regulated (perhaps not quite as much as it should be) and very safe. But when someone screws up, the consequences are very visible, just as when an airline pilot screws up and the safeguards don't work. The decentralized system means the consequences of a screwup are limited, and not very visible.
I believe in Murphy's law--if humans are involved, someone will screw up. So keeping human involvement to a minimum in a system will result in a safer system. Mostly true.
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